Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs12919938 chr16:1699265 T/A 5.1E-5 177 25.28 19.3 19.83 KM Plot
PCPG rs12922047 chr16:90155441 T/G 8.74E-9 176 25.87 20.2 6.62 KM Plot
PCPG rs12922553 chr16:1760091 A/G 5.3E-5 176 25.47 18.75 17.77 KM Plot
PCPG rs12922644 chr16:1776190 C/T 0 170 25.6 24.1 2.93 KM Plot
PCPG rs12925525 chr16:1773914 G/T 0 171 25.6 21.7 2.93 KM Plot
PCPG rs12926146 chr16:1694225 G/T 4.72E-5 178 25.28 22.73 19.83 KM Plot
PCPG rs12927006 chr16:71549911 A/G 0 177 24.53 28.47 3.17 KM Plot
PCPG rs12927456 chr16:71505706 A/G 0 177 24.5 28.47 3.17 KM Plot
PCPG rs12930056 chr16:89946649 C/A 0.000157 176 25.77 21.5 36.37 KM Plot
PCPG rs12930313 chr16:1765232 A/G 6.54E-5 174 25.6 15.85 17.77 KM Plot
PCPG rs12930606 chr16:89946682 A/G 0.000157 176 25.77 21.5 36.37 KM Plot
PCPG rs12930612 chr16:12072203 G/A 0.000292 175 25.6 24.53 25.57 KM Plot
PCPG rs12930631 chr16:90084157 G/A 0.000473 171 24.77 27.6 21 KM Plot
PCPG rs12933317 chr16:89828220 A/G 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs12934529 chr16:1765483 T/C 6.54E-5 174 25.6 15.85 17.77 KM Plot